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What Causes Iron Deficiency: The Underlying Factors You Need To Know

  • Writer: Renee Grandi
    Renee Grandi
  • May 27
  • 5 min read


Iron deficiency is one of the most common nutrient deficiencies globally, yet it's often treated in isolation without fully investigating the underlying cause. In integrative and functional medicine, iron deficiency is not viewed as a standalone issue but as a downstream effect of imbalances in digestion, hormones, immunity, inflammation, or metabolism. To truly resolve iron deficiency, we must explore the why beneath the lab results.


This article provides a comprehensive breakdown of how iron is absorbed, utilised, and lost in the body, what symptoms it creates, what interferes with it, and how we can rebuild it from the inside out.


Signs and Symptoms of Iron Deficiency


Iron deficiency affects multiple systems in the body. It can show up subtly at first and become progressively more debilitating.


Common symptoms include:


  • Fatigue and low stamina

  • Brain fog and poor concentration

  • Anxiety and increased nervousness

  • Heart palpitations or fluttering

  • Feeling light-headed, especially on standing

  • Cold hands and feet

  • Pale or sallow skin

  • Period pain and/or heavy periods

  • Hair loss or brittle hair

  • Brittle nails with ridging

  • Headaches, especially premenstrually

  • Restless legs at night

  • Poor sleep or insomnia

  • Increased PMS and mood swings

  • Low immune resilience / frequent illness

  • Poor wound healing


Biochemistry of Iron: Storage, Absorption, and Utilisation


Iron plays a vital role in the transport of oxygen (via haemoglobin), mitochondrial energy production, neurotransmitter synthesis (especially dopamine and serotonin), DNA replication, and immune cell function.

  • Storage: Iron is stored primarily in the liver, spleen, and bone marrow. It is stored as ferritin, a protein that buffers the body against both iron overload and deficiency.


  • Absorption: Iron absorption occurs in the duodenum and proximal jejunum (upper small intestine). It depends on:

    • Adequate stomach acid (HCl) to release iron from food

    • A healthy gut lining (no inflammation or damage)

    • The presence of vitamin C, which enhances non-heme iron absorption


  • Transport & Utilisation:

    • Iron binds to transferrin in the blood and is transported to cells, especially the bone marrow for red blood cell production.

    • Cells use iron in mitochondria, enzymes, and for oxygen transport.

    • It is tightly regulated because excess free iron can drive oxidative stress.


Root Causes of Iron Deficiency in Integrative Medicine


1. Low Stomach Acid (Hypochlorhydria)


Adequate hydrochloric acid is essential to release iron from dietary sources, particularly heme iron from red meat. Stress, ageing, H. pylori infections, and antacids/PPIs can all lower stomach acid and reduce iron uptake.


2. Heavy Menstrual Bleeding (Menorrhagia)


Blood loss is the most apparent cause of iron depletion. Common causes of heavy periods include:

  • Endometriosis

  • Adenomyosis

  • PCOS with oestrogen dominance

  • Uterine fibroids

  • Perimenopausal anovulatory cycles


Signs of heavy bleeding include:

  • Soaking pads/tampons every 1–2 hours

  • Needing to double up on protection

  • Bleeding longer than 6 days

  • Passing clots larger than a 10-cent coin

  • Bleeding more than 80mls of blood per period (5 tbsps)


3. Inflammatory Gut Conditions


Diseases like:

  • Coeliac disease

  • Crohn’s disease

  • Ulcerative colitis

  • Irritable bowel syndrome with inflammation


Inflammation damages the intestinal villi where iron is absorbed and may raise hepcidin, a hormone that blocks iron absorption during inflammation.


4. Coeliac Disease and Non-Coeliac Gluten Sensitivity


Even without overt symptoms, gluten can cause low-grade villous atrophy, reducing surface area for iron absorption. Coeliac disease is often undiagnosed in cases of unexplained iron deficiency.


5. Underlying Chronic Viral Infections


Chronic or reactivated viral infections can severely impact mitochondrial function, immune signalling, and nutrient utilisation.


Key viruses include:

  • Epstein-Barr Virus (EBV)

  • Cytomegalovirus (CMV)

  • Herpes Simplex Virus (HSV-1/2)

  • Human Herpesvirus 6 (HHV-6)


These viruses increase cytokine activity, suppress the gut, increase inflammation, and trigger elevated hepcidin levels (which block iron from entering circulation). Symptoms may include chronic fatigue, joint pain, swollen glands, poor immune recovery, and flares during stress.


6. Food Intolerances / Allergies

Common triggers like gluten, dairy, eggs, or food chemicals (histamine, salicylates) can create mucosal inflammation, impairing absorption over time.


7. Dysbiosis & Parasitic Infections


Pathogenic bacteria and parasites compete for iron and damage the gut lining. Blastocystis hominis and Dientamoeba fragilis are common culprits in unexplained iron deficiency with fatigue and IBS-like symptoms.


8. Postpartum Iron Depletion


Pregnancy increases demand dramatically, and many women begin the postpartum period in a state of significant deficiency due to blood loss and increased needs during recovery.


Optimal Pathology Testing for Iron Status

Test

Normal Range

Optimal Range

Notes

Ferritin

30–300 µg/L

60–100 µg/L

Below 30 indicates storage deficiency. Over 150 may indicate inflammation.

Serum Iron

10–30 µmol/L

18–25 µmol/L

Can fluctuate daily. Best taken fasted.

Transferrin Saturation

20–45%

30–40%

Indicates how much iron is bound and available for use.

TIBC (Total Iron Binding Capacity)

45–72 µmol/L

50–65 µmol/L

High levels may reflect deficiency.

CRP / hs-CRP

<5 mg/L

<1 mg/L

Elevated in inflammation, which skews ferritin.

Vitamin B12

140–700 pmol/L

400–700 pmol/L

Often low alongside iron.

Folate

>10 nmol/L

>15 nmol/L

Required for red blood cell formation.

TSH / Free T3 / Free T4

Lab-dependent

Optimal thyroid function needed for iron use.



Iron Supplementation: Best Practices


  • Use highly absorbable forms: Iron bisglycinate or liposomal iron.

  • Take with vitamin C: 500 mg improves absorption 2–3x.

  • Avoid co-ingestion with: Calcium, zinc, magnesium, dairy, coffee/tea, high-fibre meals.

  • Timing: Take away from meals on an empty stomach, where tolerated.

  • Reassess ferritin every 8–12 weeks, not sooner, to allow time for levels to shift.


Iron-Rich & Blood-Building Foods


Animal Sources (heme iron):

  • Liver (chicken/beef)

  • Red meat (beef, lamb, kangaroo)

  • Oysters, sardines, shellfish


Plant-Based (non-heme):

  • Lentils, chickpeas, kidney beans

  • Pumpkin seeds, sesame seeds

  • Dark leafy greens (cooked)

  • Blackstrap molasses

  • Beetroot

  • Parsley


Blood-building foods:

  • Bone broth

  • Nettle tea

  • Dates and prunes

  • Egg yolks

  • Red root vegetables


Best prepared as:

  • Slow-cooked, warming meals that support spleen/stomach qi (TCM perspective)

  • With warming spices: ginger, turmeric, cinnamon, fennel


What Interferes With Iron Absorption & Utilisation?


  • Caffeine (within 1 hour of supplementation)

  • Calcium or dairy-rich meals

  • Excessive fibre or phytates (in grains)

  • Inflammation / chronic infections

  • Low stomach acid

  • Stress and cortisol dysregulation


When Iron Is Low, Look Beyond the Labs


Low iron rarely exists in isolation. It's often part of a broader functional picture involving:


  • Hypothyroidism (T4 to T3 conversion requires iron)

  • Adrenal dysfunction (high cortisol depletes iron stores)

  • Mood disorders (low dopamine, serotonin linked to iron and B6 status)

  • Histamine intolerance (iron is a cofactor in DAO enzyme)

  • Period pain (linked to prostaglandin and magnesium imbalances, worsened by low iron)


Final Thoughts & Practitioner Support


If you're dealing with chronic fatigue, anxiety, dizziness, or hormone symptoms that haven’t improved with iron alone, it’s likely there’s more going on beneath the surface. Correcting iron deficiency requires more than just topping up a number. It means understanding the full picture of gut health, hormones, immune function, inflammation, and nutrient synergy.


If you’d like support navigating this process and rebuilding your health in a tailored, efficient way, I offer one-on-one consultations through my clinic.


You can book a session or a free 10-minute clarity call here: www.womensintegrativehealthclinic.com.au/services-page










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